species:   Rhsol
pid:       PID0560
parent:    Rhi-milR-172
paralog:   
locus:     KB317727.1:133079-133162
matures:   ['UUGUGGGGACUCUGUUAUAGG', 'UGUGACUUGGGCACCCACUGCC']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317727.1:133079-133162

29 out of bounds
19 alignments
19 proper strand
17 stranded perfect matches

        ************************                  *************************         
UCCAGUAUUGUUGUGGGGACUCUGUUAUAGGACAGGUUUAUGAUAACCUGAUCUGUGACUUGGGCACCCACUGCCAUUGUAUUC
..((((...((.(((((..(((.((((((((.((((((......)))))).))))))))..)))..))))).)).)))).....
----------UUGUGGGGACUCUGUUAUAGG----------------------------------------------------- l=21 a=0 c
-----------------------------------------------------UGUGACUUGGGCACCCACUGCC--------- l=22 a=1 c*
----------UUGUGGGGACUCUGUUAUAGGA---------------------------------------------------- l=22 a=5 ma
----------------------------------------------------CUGUGACUUGGGCACCCACUGCC--------- l=23 a=0 ma*

UCCgGUAUUGUUGUGGGGACUCU------------------------------------------------------------- l=23 a=1 
-------UUGUUGUGGGGACUCUGUUAUAGG----------------------------------------------------- l=24 a=1 
--------UGUUGUGGGGACUCUGUUAUAGG----------------------------------------------------- l=23 a=1 
--------UGUUGUGGGGACUCUGUUAUAGGA---------------------------------------------------- l=24 a=1 
----------UUGUGGGGACUCUGUUAUAGGA---------------------------------------------------- l=22 a=5 (ma)
----------UUGUGGGGACUCUGUUAUAGGACA-------------------------------------------------- l=24 a=1 
-----------UGUGGGGACUCUGUUAUAGGA---------------------------------------------------- l=21 a=2 
-----------UGUGGGGACUCUGUUAUAGGACAGG------------------------------------------------ l=25 a=1 
-------------UGGGGACUCUGUUAUAGGACAGG------------------------------------------------ l=23 a=2 
------------------------UUAUAGGACAGGUUUAUGAUAA-------------------------------------- l=22 a=1 
------------------------------------------------UGAUCUGUGACUUGGGCACCu--------------- l=21 a=1 
--------------------------------------------------AUCUGUGACUUGGGCACCCACUG----------- l=23 a=1 
-----------------------------------------------------UGUGACUUGGGCACCCACUGCC--------- l=22 a=1 (c*)

mb-01011
ax-1001011
ku-01
ss-111111101100
fn-111
